Basic Information
VIS ID
TVIS30009179
Fusion event
HIV-HIVEP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
143183666/142862529 (Hg38)
End
143183666/142862529 (Hg38)
Orient
+
Location type
Intronic
Target gene
HIVEP2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-130b-3p ; hsa-mir-598-3p ; hsa-mir-484 ; hsa-mir-10b-5p ; hsa-mir-136-5p ; hsa-mir-298 ; hsa-mir-5684 ; hsa-mir-5700 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4662a-3p ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-302c-3p ; hsa-mir-372-3p ; hsa-mir-520e ; hsa-mir-520b ; hsa-mir-373-3p ; hsa-mir-520a-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p
Nearest miRNA
hsa-mir-10398/Upstream/2178646; hsa-mir-1202/Downstream/8240146;
Nearest TSS
ENST00000381078/Upstream/25482; ENST00000417650/Downstream/82502;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/560213, chr6-CpG: 60/Downstream/64143
Upstream sequence
tatattttataatacatataatcgattatatgtatcatatattttataatacatataatcgattatatgtatcatatattttataataCATATAATCGAT
Downstream sequence
TATGTGTATCAtatattttataatacacataatcgattatgtgtatcatatattttataatacatataatcgattcataatcgattatatgtattatata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate