VISDB Viral Integration Site DataBase

VIS ID

TVIS30009181

Fusion event

HIV-PHACTR2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q24.2

Reference genome

Start

End

144056218/143735081 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-21-5p ; hsa-mir-378a-3p ; hsa-mir-185-5p ; hsa-mir-383-3p ; hsa-mir-708-3p ; hsa-mir-369-3p ; hsa-mir-374a-5p ; hsa-mir-655-3p ; hsa-mir-374b-5p ; hsa-mir-374c-5p ; hsa-mir-140-5p ; hsa-mir-145-5p ; hsa-mir-152-3p ; hsa-mir-181a-5p ; hsa-mir-195-5p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-136-5p ; hsa-mir-155-5p ; hsa-mir-5189-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-5580-3p ; hsa-mir-1277-5p ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-8068 ; hsa-mir-5087 ; hsa-mir-4733-3p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-4668-5p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-4276 ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-371b-3p ; hsa-mir-590-3p ; hsa-mir-4778-3p

Nearest miRNA

hsa-mir-10398/Upstream/3051198; hsa-mir-1202/Downstream/7367594;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/56551, chr6-CpG: 62/Downstream/107825

Upstream sequence

GAATCTGGTCCTTATCACTGAGGGCTAAGTCCTGGAAAGTGACTGTTTTTTGGCTTACATATTTTCCTGATTTATTTCTCACTTAGAATATAAGATGCAA

Downstream sequence

TCTTAATTTTTACTTCTTTTGTGTTAGGTGTTTGCTCACCTAGGCTTATAACACTTTTTGTCCGAAGGTTTCTCCAACTGATTCCCAAGCCTAGACTGTA