Basic Information
VIS ID
TVIS30009186
Fusion event
HIV-STXBP5-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
147517903/147196767 (Hg38)
End
147517903/147196767 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
STXBP5-AS1
Nearest miRNA
hsa-mir-10398/Upstream/6512884; hsa-mir-1202/Downstream/3905908;
Nearest TSS
ENST00000381078/Upstream/37842; ENST00000546097/Downstream/5700;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/597658, chr6-CpG: 133/Downstream/6910
Upstream sequence
GGTGGCGGGGGAGTATTTGAAAAACTGCCCTGAGCTGGGGTAGAAGGTGGTGGGGAAGCTGATAAAAGGGTGAAGAGAACTCAGAGGATGTTTTTCTATG
Downstream sequence
CTAAGTGTTTTATCTTCCTTCAAAAGTGGCCTTAACAGATTAAAACAATATCTAAATTGTTTTCCAAGTCTTTGGAGCTAGGGgtgtgtgtgtgtgtgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate