Basic Information
VIS ID
TVIS30009187
Fusion event
HIV-STXBP5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
147538920/147217784 (Hg38)
End
147538920/147217784 (Hg38)
Orient
+
Location type
Intronic
Target gene
STXBP5
miRNAs that regulate target gene
hsa-mir-21-5p
Nearest miRNA
hsa-mir-10398/Upstream/6533901; hsa-mir-1202/Downstream/3884891;
Nearest TSS
ENST00000381078/Upstream/13170; ENST00000367475/Downstream/109389;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/13072, chr6-CpG: 23/Downstream/189162
Upstream sequence
AACCCAGTGAATACTATAATTATGTATTAGTCTGAATGTTGCAATTACTTTTCTGTTTTGGTGCTTGTTTTATTCACATTAAAACAAAAAAGCAGTTGAC
Downstream sequence
CGACCTAAATTTTCAGATACTGTTGGACATTTGTAAAATGTTACAGTTGTCTTGACTTAAAGTTTTAAATGTTGATGTGCACATTTTTCATGGCTATTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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