VISDB Viral Integration Site DataBase

VIS ID

TVIS30009190

Fusion event

HIV-UST integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.1

Reference genome

Start

End

149377206/149056070 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-335-5p ; hsa-mir-98-5p ; hsa-mir-1296-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-3978 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-486-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6743-5p ; hsa-mir-194-3p ; hsa-mir-4688 ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-5692a ; hsa-mir-154-5p ; hsa-mir-374a-5p ; hsa-mir-369-3p ; hsa-mir-374b-5p ; hsa-mir-149-5p ; hsa-mir-660-3p ; hsa-mir-5196-3p ; hsa-mir-5193 ; hsa-mir-6765-3p

Nearest miRNA

hsa-mir-10398/Upstream/8372187; hsa-mir-1202/Downstream/2046605;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/177358, chr6-CpG: 113/Downstream/260812

Upstream sequence

TTCTTCTCTCATGTCAGAAAAATTAAAATGTTTTAATTTTTTTCCCAGGCTGCATTTGCAAGTTTTAATATGTCTATAACATTTTTATAGTATATCAGTA

Downstream sequence

TCCATATCAAACATTTAACTCTGTTACTCTGCttttcttttcttttcttttttttttttttttttttttttttgaaatggggtctcgctatgtcgctgca