VISDB Viral Integration Site DataBase

VIS ID

TVIS30009202

Fusion event

HIV-ESR1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.1

Reference genome

Start

End

152082865/151761730 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-302c-3p ; hsa-mir-206 ; hsa-mir-193b-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-22-3p ; hsa-mir-19a-3p ; hsa-mir-29b-3p ; hsa-mir-19b-3p ; hsa-mir-20b-5p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-130a-3p ; hsa-mir-26a-5p ; hsa-mir-145-5p ; hsa-mir-3668 ; hsa-mir-4671-3p ; hsa-mir-4709-3p ; hsa-mir-7852-3p ; hsa-mir-100-5p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-6757-3p ; hsa-mir-4422 ; hsa-mir-548e-5p ; hsa-mir-454-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-129-5p ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-4290 ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-5589-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-7855-5p ; hsa-mir-9-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-3121-5p ; hsa-mir-1910-5p ; hsa-mir-26b-3p ; hsa-mir-192-5p ; hsa-mir-335-3p

Nearest miRNA

hsa-mir-10398/Upstream/658954; hsa-mir-1202/Downstream/3091630;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/267338, chr6-CpG: 105/Downstream/45957

Nearest cancer related gene

ESR1(TSG, No orient, 0)

Upstream sequence

tgatgcaaaacagtccatctagaacagtaagccctcaataaatgctagctatcattATCATTTCATAGccagccccaccatggatgggtcatgtgacctg

Downstream sequence

aagcaaatttaaattctctggatttcagttatctctcattgaaggaattaggctCCATcagtggttctcaaactcaagtgagtatcagaatcacagggag