Basic Information
VIS ID
TVIS30009204
Fusion event
HIV-LOC105378065 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
153131734/152810599 (Hg38)
End
153131734/152810599 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378065
Nearest miRNA
hsa-mir-10398/Upstream/1707823; hsa-mir-1202/Downstream/2042761;
Nearest TSS
ENST00000381078/Upstream/5471; ENST00000442269/Downstream/21314;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/173262, chr6-CpG: 146/Downstream/171674
Nearby gene
VIP(No orient, 50832)
Upstream sequence
CTTGCCACTAAGATAAGAATACTGCTTTCAGAATTTCCTTCTGAACTTTCTAGGCAAGCCTCTCTAGTATGCATTCTCCAAAATCAGATATATTACTGAA
Downstream sequence
CTATCATATAGTCCAAGACTGTAAATCTTTGGTTCATACAATGTCAGGGATCATGGAGAAATTTAACATTTAGGAAAAAAAAGTTATCTGTGGATATTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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