Basic Information
VIS ID
TVIS30009210
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
155815672/155494538 (Hg38)
End
155815672/155494538 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/641102; hsa-mir-1202/Downstream/452259;
Nearest TSS
ENST00000381078/Upstream/38635; ENST00000637910/Downstream/1004428;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/179790, chr6-CpG: 41/Downstream/902399
Nearby gene
NOX3(No orient, 38635)
Upstream sequence
Tgttatttttaatatttgattggctatatctgtaaaccatagacttctgtttcaacttcagagcacggaacaatggttggaagtaacagatgtttttttc
Downstream sequence
cccaccagaagaaagaagtataagaaaatatacttctgctcctcaaataaataaagggtcagttcacaaagtattgagttacctgaagcctgagtaacca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate