Basic Information
VIS ID
TVIS30009214
Fusion event
HIV-LOC112267968 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
159500784/159079752 (Hg38)
End
159500784/159079752 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112267968
Nearest miRNA
hsa-mir-10398/Upstream/314999; hsa-mir-1913/Downstream/7429602;
Nearest TSS
ENST00000381078/Upstream/14479; ENST00000421161/Downstream/14341;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/79491, chr6-CpG: 28/Downstream/49298
Nearby gene
TAGAP(No orient, 34600)
Upstream sequence
CAGAGATCTGCAATGAGGAAATCTTAACCCTGAACAATTCATGGAGAAAATATCTTCTGGGATATTTGAACCATCAAGAGTTGGGATAATTTAACATATG
Downstream sequence
GGCTATAAAATGAGGAAGAAGGAGACAAATTTAAATGCTTCCTTTAATTAGAATATCTTGGTGAAATTGGGTTATAGCCTCCTGGGACCAATTGTTTTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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