Basic Information
VIS ID
TVIS30009219
Fusion event
HIV-MPC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
166784832/166371344 (Hg38)
End
166784832/166371344 (Hg38)
Orient
-
Location type
Intronic
Target gene
MPC1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-331-3p
Nearest miRNA
hsa-mir-10398/Upstream/7606591; hsa-mir-1913/Downstream/138010;
Nearest TSS
ENST00000381078/Upstream/1009; ENST00000568025/Downstream/11527;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/28322, chr6-CpG: 189/Downstream/10536
Upstream sequence
tactactggactacttaaagtagggcctggcatttaaactggaatttaaaaaatatttattgaatgaatgaatGAATAGTAAAAATGTCAATGCTGTTTT
Downstream sequence
CCAGAATGTTAAATTTAAAAATACACCAAAAACTTATATTGAGTTACTTTTATTTCTGAAATAACAATTTCTCTTGCCAGGATATACCTGAGCTCTTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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