VISDB Viral Integration Site DataBase

VIS ID

TVIS30009220

Fusion event

HIV-FGFR1OP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q27

Reference genome

Start

End

167434802/167021314 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-340-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-32-3p ; hsa-mir-651-3p ; hsa-mir-583 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-891b ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-203a-3p ; hsa-mir-8485 ; hsa-mir-451b ; hsa-mir-3942-3p ; hsa-mir-4696 ; hsa-mir-205-3p ; hsa-mir-6502-3p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-1288-3p ; hsa-mir-6778-3p ; hsa-mir-1205 ; hsa-mir-4740-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-509-5p ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6781-5p ; hsa-mir-6877-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-383-3p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-3670 ; hsa-mir-6868-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-130b-5p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-877-3p ; hsa-mir-3675-3p ; hsa-mir-377-5p ; hsa-mir-4293 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-6771-3p ; hsa-mir-1250-3p ; hsa-mir-129-5p ; hsa-mir-153-5p ; hsa-mir-627-5p ; hsa-mir-8055 ; hsa-mir-8081 ; hsa-mir-924 ; hsa-mir-937-5p

Nearest miRNA

hsa-mir-10398/Upstream/23402; hsa-mir-4644/Downstream/3309447;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/21380, chr6-CpG: 17/Downstream/152552

Nearest cancer related gene

FGFR1OP(OG, No orient, 0)

Upstream sequence

GGAAATTGCCATTTTTAACCCATAAAGCCCACAAATTCATTATAATTTAGCTTAATAGCATAAATATTGAGTTAACCTCTGGAAGCAGGCTTTGACTTTG

Downstream sequence

ATATTGACCTGACCACTTAACTCTCTGGAGACTTTGACAAGTGACATCAATGTCTGTCTCTGTGTTTCCTGATTTATATCCACAGATAGAAAGCCATCTC