Basic Information
VIS ID
TVIS30009222
Fusion event
HIV-WDR27 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
169892010/169491915 (Hg38)
End
169892010/169491915 (Hg38)
Orient
+
Location type
Intronic
Target gene
WDR27
Nearest miRNA
hsa-mir-10398/Upstream/2494003; hsa-mir-4644/Downstream/838846;
Nearest TSS
ENST00000381078/Upstream/64846; ENST00000332290/Downstream/157318;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/39330, chr6-CpG: 65/Downstream/85207
Upstream sequence
CTAACATCCTGAGATGAGAAATACTGCTGCAAATTCCTCACATGAGGTCCCAAAGACTTTGGAAAGAAGCAACTGCAAAATCAAGTAGGAAGAGATAAGC
Downstream sequence
TGAGAAAGAGAAAAAAAATGAGAATATTCTtcaactaaaaataaatctataaattaaaattgtaaaacacatattgatattgaatgctaagaggacagac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate