Basic Information
VIS ID
TVIS30009223
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
170336953/170021729 (Hg38)
End
170336953/170021729 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3023817; hsa-mir-4644/Downstream/309032;
Nearest TSS
ENST00000381078/Upstream/211627; ENST00000429305/Downstream/140788;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/33085, chr6-CpG: 136/Downstream/1261
Nearby gene
LINC00574(No orient, 133984)
Upstream sequence
TTGCCACCCAGTTGAGTGTCAAGTGGAAGTTCGGAGCCATTGGCTCCATCCCGGCTGCCCACAGAGGGAAAAAGTGCTGCTAAAGGGGTCGTGTGTTTGG
Downstream sequence
GGAGATGGACTGAAAGCACTCGTGGGTGTGGAGAGGACCGTGGGCTCTGTCCAAGCCCTGCTGCCTCTGGCCTGGACTGGGAGTGTGCTGCAAGGTCTGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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