Basic Information
VIS ID
TVIS30009224
Fusion event
HIV-LOC101927021 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
1203169/1163533 (Hg38)
End
1203169/1163533 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7B
Target gene
LOC101927021
Nearest miRNA
hsa-mir-339/Upstream/140507; hsa-mir-10399/Downstream/680647;
Nearest TSS
ENST00000635602/Upstream/2774; ENST00000316333/Downstream/69374;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2950, chr7-CpG: 26/Downstream/47657
Upstream sequence
cgtctttttctcccttaggcacatgacagccttcttgcaatcaagaaactaCGTGTggccaggtacggtggctcacgcatgtaattccagcacttgggga
Downstream sequence
ggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctgaccagtatggtgaaactccttctctagtaaaaatacagacattagccgggca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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