Basic Information
VIS ID
TVIS30009231
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
3262454/3222822 (Hg38)
End
3262454/3222822 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-339/Upstream/695677; hsa-mir-10399/Downstream/1565743;
Nearest TSS
ENST00000635602/Upstream/24566; ENST00000478527/Downstream/78626;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/178975, chr7-CpG: 185/Downstream/77900
Nearby gene
LOC100129603(No orient, 64248)
Upstream sequence
aaattggaattcccggtgttggagatggggcctggggggaggtgattaaatcgtggttgcaaatttccccttcggtgctgttcttgcaatagtgagtgag
Downstream sequence
ttattgcaagatctggttgtttaaaagtgcgtggtacctccccgatctctctcttcctcctgctccagccatgtatgaaatgcctacttctacctaacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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