Basic Information
VIS ID
TVIS30009244
Fusion event
HIV-UMAD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
7767089/7727458 (Hg38)
End
7767089/7727458 (Hg38)
Orient
-
Location type
Intronic
Target gene
UMAD1
Nearest miRNA
hsa-mir-339/Upstream/660413; hsa-mir-10399/Downstream/10399762;
Nearest TSS
ENST00000635602/Upstream/8851; ENST00000406829/Downstream/44903;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/86410, chr7-CpG: 81/Downstream/241768
Upstream sequence
ggattggtgtgttttcggttgtacatagcatagttgaattatgttaggcataattatgaccttattattgtctttatttgaaaattatatatgatctcag
Downstream sequence
gaaatgtgtatgagttcaagttgacaaggagtggatttgggatggttgatactgagtgtcaacttgattggattgaagcatgcagagtaataatcctggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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