VISDB Viral Integration Site DataBase

VIS ID

TVIS30009248

Fusion event

HIV-SCIN integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p21.3

Reference genome

Start

End

12671260/12631635 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4734 ; hsa-mir-182-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-5002-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-3163 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-5582-3p ; hsa-mir-8485 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-1267 ; hsa-mir-129-5p ; hsa-mir-3672 ; hsa-mir-367-5p ; hsa-mir-4423-5p ; hsa-mir-4524a-3p ; hsa-mir-4797-5p ; hsa-mir-5007-5p ; hsa-mir-593-3p ; hsa-mir-6501-5p ; hsa-mir-6864-3p ; hsa-mir-744-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-339/Upstream/5564590; hsa-mir-10399/Downstream/5495585;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/60426, chr7-CpG: 111/Downstream/54896

Upstream sequence

tcattaatggatgaatgggttatcatgagaatggggccagtggctttataagaagagaaagaagcctgagctggcatactcaaccccctcactgtgtgat

Downstream sequence

gacctgcactgcctcaggagtctgcagagtctttgccagcaagaaaaccctcaccagatgtgatctcttgactttggacttctcaccctccataactgta