Basic Information
VIS ID
TVIS30009249
Fusion event
HIV-LOC107986770 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
13568261/13528636 (Hg38)
End
13568261/13528636 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986770
Nearest miRNA
hsa-mir-339/Upstream/6461591; hsa-mir-10399/Downstream/4598584;
Nearest TSS
ENST00000635602/Upstream/163587; ENST00000638774/Downstream/188579;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/841013, chr7-CpG: 18/Downstream/461117
Nearby gene
ETV1(No orient, 362595)
Upstream sequence
TAATGCTTTCATATGAAAATAATGGACTTTTTTCttttttttattattatactttaagttctagggtacatgtgcacaacatgcaggtttgctacatatg
Downstream sequence
tatacctgtgccatgtcggtgtgctgcacccattaactcatcagttacattaggtgtatttcctaatgctatccctccccgctcaccctatcccacgaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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