Basic Information
VIS ID
TVIS30009250
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
17195093/17155469 (Hg38)
End
17195093/17155469 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927609 ; LOC107986772
Nearest miRNA
hsa-mir-339/Upstream/10088424; hsa-mir-10399/Downstream/971751;
Nearest TSS
ENST00000635602/Upstream/23279; ENST00000475440/Downstream/125834;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/304006, chr7-CpG: 107/Downstream/143159
Nearby gene
AHR(No orient, 143183)
Upstream sequence
cctatgtttacaggtaagaaaacttaacattgttaaaatgctaatacaatcctcCCTTGATATTTGTGGGAAGATTGGTTTCAGGAGCCCCTGTGGATAG
Downstream sequence
CACATgcatatctgtgcaatagaatgttatttggacataaggaatgaagtattgatatatactataatttgaatgaactttgtccattatgttgactgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate