VISDB Viral Integration Site DataBase

VIS ID

TVIS30009252

Fusion event

HIV-AHR integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p21.1

Reference genome

Start

End

17351641/17312017 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-130b-3p ; hsa-mir-98-5p ; hsa-mir-625-5p ; hsa-mir-26a-5p ; hsa-mir-3927-3p ; hsa-mir-6831-5p ; hsa-mir-181a-5p ; hsa-mir-1273e ; hsa-mir-6516-5p ; hsa-mir-550b-2-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-1227-3p ; hsa-mir-4451 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-377-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-3117-3p ; hsa-mir-4775 ; hsa-mir-1258 ; hsa-mir-4645-3p ; hsa-mir-4699-5p ; hsa-mir-16-1-3p ; hsa-mir-545-5p ; hsa-mir-1197 ; hsa-mir-383-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4284 ; hsa-mir-2467-5p ; hsa-mir-383-3p ; hsa-mir-4761-5p ; hsa-mir-29a-3p

Nearest miRNA

hsa-mir-339/Upstream/10244972; hsa-mir-10399/Downstream/815203;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/12540, chr7-CpG: 82/Downstream/628134

Nearest cancer related gene

AHR(TSG, No orient, 0)

Upstream sequence

GGATTTTTTCCTAGACCTgtggttcttaaaagtgtagtatccagacaggcagcatcagcatcacctgggaacttgctagaaatgcaaattattgggtcca

Downstream sequence

accctagacctgtggaatctaaggtggtgggaccTTTGGTGATAGGGCTAGATGCATATTGAAGTTTAGGAGCCACTGCTGTAGATTGTAACTTCAGGCC