Basic Information
VIS ID
TVIS30009254
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
17608411/17568787 (Hg38)
End
17608411/17568787 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/10501742; hsa-mir-10399/Downstream/558433;
Nearest TSS
ENST00000635602/Upstream/9878; ENST00000448898/Downstream/110762;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/269310, chr7-CpG: 82/Downstream/371364
Nearby gene
LOC101927630(No orient, 9878)
Upstream sequence
ccctctacacactgctttgaatgtgtcccggagactctggtatgttgtgtctttgttctcactggtttcaaagaacatctttatttctgccttcattttg
Downstream sequence
ttacgtacccagcagtcattcaggagcaggttgttcagtttccatgtagttgagcggttttgagtgagtttcttaatcctgagttctagtttgattgcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate