Basic Information
VIS ID
TVIS30009262
Fusion event
HIV-MPP6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
24723032/24683413 (Hg38)
End
24723032/24683413 (Hg38)
Orient
-
Location type
Intronic
Target gene
MPP6
miRNAs that regulate target gene
hsa-mir-197-3p ; hsa-mir-25-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-8076 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-5096 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-3671 ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-3680-5p ; hsa-mir-4798-3p
Nearest miRNA
hsa-mir-1183/Upstream/3212267; hsa-mir-10399/Downstream/1266506;
Nearest TSS
ENST00000635602/Upstream/17730; ENST00000607375/Downstream/22624;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/109130, chr7-CpG: 106/Downstream/73509
Upstream sequence
tcagctttcagaataatgagtttattccccaagagcctctagaggtaacaggtgaccagctgagattggctttgtttttttagtttcatgagcacgtatg
Downstream sequence
ttcaaacttatctggtgtgctttattctgttgcagtgattatttttattgatgctaagattgtcccatcattgaccaataggagcttattctagttggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate