Basic Information
VIS ID
TVIS30009266
Fusion event
HIV-NFE2L3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
26209644/26170024 (Hg38)
End
26209644/26170024 (Hg38)
Orient
+
Location type
Intronic
Target gene
NFE2L3
Nearest miRNA
hsa-mir-1183/Upstream/220038; hsa-mir-10399/Downstream/999456;
Nearest TSS
ENST00000635602/Upstream/17784; ENST00000607375/Downstream/4921;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/16887, chr7-CpG: 263/Downstream/29774
Upstream sequence
ccgtctctaccaaaaaaaaaaaTGCTTCTTAAGAGCTATGCAGTCTCTTCTTCCCCTTCTTAAGAGCTATGCAGTCTCTTCCCCTGTGGCCTCAGGTGGG
Downstream sequence
TCACCATAtgggatagtcctggtttatgcttgttgcccagcctaatggttaatagtaccctcttaccctctcaaaagtggatgggtttggtgataaatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate