Basic Information
VIS ID
TVIS30009268
Fusion event
HIV-LOC441204 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
26503240/26463620 (Hg38)
End
26503240/26463620 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC441204
Nearest miRNA
hsa-mir-1183/Upstream/513634; hsa-mir-10399/Downstream/705860;
Nearest TSS
ENST00000635602/Upstream/23361; ENST00000457000/Downstream/75168;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/64525, chr7-CpG: 64/Downstream/400630
Upstream sequence
tgccatattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacgtgtgcatg
Downstream sequence
tgtctttatagcagcatgatttataatcctttgggtatatacacagtaatgggatggctgggGGAGAcccattttctatgatgtgattattacacatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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