Basic Information
VIS ID
TVIS30009270
Fusion event
HIV-HIBADH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
27698221/27658602 (Hg38)
End
27698221/27658602 (Hg38)
Orient
+
Location type
Intronic
Target gene
HIBADH
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-627-3p ; hsa-mir-3124-3p ; hsa-mir-942-5p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-520f-5p ; hsa-mir-1228-3p
Nearest miRNA
hsa-mir-1183/Upstream/489039; hsa-mir-10399/Downstream/2022132;
Nearest TSS
ENST00000635602/Upstream/10846; ENST00000490455/Downstream/4255;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/406024, chr7-CpG: 54/Downstream/3999
Upstream sequence
ACCTTAAGTGCTATCAAAAAGCAGGTTTCACTAAGTGTCAAAATGCAAAAATTGGTAACAAGTTAATTATTTTACATTTCTGAGGCTTCTTTTCTATTCA
Downstream sequence
AAGTAATGCATTTTCATTGTAGAAAACTAGAATGAAAAAGTATACAGTTGTAAGGGGAAGCAATCTCATTACACAAAAATAAAAAAAACATTTTGCATGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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