Basic Information
VIS ID
TVIS30009278
Fusion event
HIV-INMT-MINDY4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
30840206/30800590 (Hg38)
End
30840206/30800590 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
INMT-MINDY4
Nearest miRNA
hsa-mir-1183/Upstream/510700; hsa-mir-10399/Downstream/1932391;
Nearest TSS
ENST00000635602/Upstream/21054; ENST00000409881/Downstream/2820;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/28656, chr7-CpG: 144/Downstream/251512
Upstream sequence
GGATGCCAGTGCATGATATGGTTCCCTGCCTCCAGAAGCCCAGGGTGCACTGGGATGCCCTGTGTAATTGGGTGCTAAATTGTGGCCCTCACAAAGGAGT
Downstream sequence
GGAAGTTCAGGGAGCAGTTAAGGGACGCTATTGAGGGGGCAGGAGGGCCCTGGGCTTGGAGAGGCAGTGTTTAATGCAAAAGACTTCCTGGTAAACCAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate