Basic Information
VIS ID
TVIS30009279
Fusion event
HIV-PDE1C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
31805871/31766257 (Hg38)
End
31805871/31766257 (Hg38)
Orient
+
Location type
Intronic
Target gene
PDE1C
Nearest miRNA
hsa-mir-1183/Upstream/1476367; hsa-mir-10399/Downstream/966724;
Nearest TSS
ENST00000635602/Upstream/70294; ENST00000645498/Downstream/54662;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/429329, chr7-CpG: 70/Downstream/304194
Upstream sequence
gcagatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctccactaaaaatacaaaaaattagccgggtgtggtggcgggcg
Downstream sequence
actgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatggcgccactgcactccagcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate