Basic Information
VIS ID
TVIS30009282
Fusion event
HIV-RP9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
33136751/33097139 (Hg38)
End
33136751/33097139 (Hg38)
Orient
+
Location type
Intronic
Target gene
RP9
Nearest miRNA
hsa-mir-1183/Upstream/364062; hsa-mir-10399/Downstream/1843621;
Nearest TSS
ENST00000635602/Upstream/34342; ENST00000482941/Downstream/3747;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/33844, chr7-CpG: 68/Downstream/11856
Upstream sequence
TTCCAAGTTACAAACAAAGATCACTTTAATAAGAATTCCTTTTTTTTGTAAAAGAGCTAATTTGTCATACAAATGTAATTTAATAAGCATGTAGTTAACA
Downstream sequence
GCACACACTTTGGTCAAAGGGCTTCTGGGAATGTATTTTATGTGACCATTCAAGTTCACTGGTGACTTTCTGCTTCACTGATTTTCACTATCTCTGATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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