Basic Information
VIS ID
TVIS30009292
Fusion event
HIV-STARD3NL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
38238308/38198707 (Hg38)
End
38238308/38198707 (Hg38)
Orient
-
Location type
Intronic
Target gene
STARD3NL
miRNAs that regulate target gene
hsa-mir-1276 ; hsa-mir-4424 ; hsa-mir-5589-3p ; hsa-let-7c-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-548g-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6826-3p ; hsa-mir-630 ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-2053 ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-3120-3p ; hsa-mir-8087
Nearest miRNA
hsa-mir-1183/Upstream/1279275; hsa-mir-10399/Downstream/4952188;
Nearest TSS
ENST00000635602/Upstream/20312; ENST00000629576/Downstream/50865;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/20307, chr7-CpG: 38/Downstream/112612
Upstream sequence
GGAAAACATACAGTGTCCTGGCTGCTGCCATAAGTAGTGCTGAGAAGGCTGGGTGGTTGGGTTGAGAGACTTGGCTTGGCTGTCAACAGGAGGTGCACAG
Downstream sequence
TCTCTCTCTTCTCCTCCTAGGAAGGCTGAGAGATTGTGGGGCTCCTGTAAAATGCAAGTAGTGGTAGCTCCTGCTCCATAGCAGCTGCTGTCCACCATCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate