Basic Information
VIS ID
TVIS30009307
Fusion event
HIV-H2AFV integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
44876746/44837147 (Hg38)
End
44876746/44837147 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7D
Target gene
H2AFV
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-100-5p ; hsa-mir-17-3p ; hsa-mir-136-5p ; hsa-mir-299-5p
Nearest miRNA
hsa-mir-1183/Upstream/726235; hsa-mir-10399/Downstream/44601;
Nearest TSS
ENST00000635602/Upstream/38333; ENST00000450016/Downstream/10874;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/39948, chr7-CpG: 72/Downstream/10521
Upstream sequence
acagggtttcaccatattggccaggctggtctcaaattcctgaccttgactccgtctcaaaaaaaataaaaaaatcaaactcctgaccttgtgatctgcc
Downstream sequence
cgccttggcctcccaaagtgttgggattacagacgtgaaccactacgccaggccACCTCCTCGTTTTAAATAGAGCAGTGTTGGGTATACAGGAGAATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate