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TVIS30009308
Basic Information
VIS ID
TVIS30009308
Fusion event
HIV-PURB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
44916346/44876747 (Hg38)
End
44916346/44876747 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA7D
Target gene
PURB
miRNAs that regulate target gene
hsa-mir-21-5p
;
hsa-mir-320b
;
hsa-mir-935
;
hsa-mir-92a-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-3611
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-5692a
;
hsa-mir-6788-5p
;
hsa-mir-302b-5p
;
hsa-mir-302d-5p
;
hsa-mir-548a-3p
;
hsa-mir-548e-3p
;
hsa-mir-548f-3p
;
hsa-mir-548ar-3p
;
hsa-mir-548az-3p
;
hsa-mir-548at-3p
;
hsa-mir-548ay-3p
;
hsa-mir-150-5p
;
hsa-mir-532-3p
;
hsa-mir-1303
;
hsa-mir-2116-3p
;
hsa-mir-3607-3p
;
hsa-mir-6807-5p
;
hsa-mir-545-5p
;
hsa-mir-151a-3p
;
hsa-mir-567
;
hsa-mir-548c-3p
;
hsa-mir-450b-5p
;
hsa-mir-1827
;
hsa-mir-5096
;
hsa-mir-4722-3p
;
hsa-mir-6727-3p
;
hsa-mir-6747-3p
;
hsa-mir-944
;
hsa-mir-4699-3p
;
hsa-mir-520f-5p
;
hsa-mir-136-5p
;
hsa-mir-218-5p
;
hsa-mir-20a-5p
;
hsa-mir-106b-5p
;
hsa-mir-578
;
hsa-mir-526b-5p
;
hsa-mir-570-5p
;
hsa-mir-548ba
;
hsa-mir-548ai
;
hsa-mir-548ag
;
hsa-mir-6516-5p
;
hsa-mir-455-3p
;
hsa-mir-6499-3p
;
hsa-mir-1233-3p
;
hsa-mir-1225-3p
;
hsa-mir-1247-3p
;
hsa-mir-3940-3p
;
hsa-mir-3680-3p
;
hsa-mir-557
;
hsa-mir-507
;
hsa-mir-3978
;
hsa-mir-542-3p
;
hsa-mir-4504
;
hsa-mir-4501
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-4463
;
hsa-mir-4499
;
hsa-mir-5582-3p
;
hsa-mir-4713-5p
;
hsa-mir-4477a
;
hsa-mir-1257
;
hsa-mir-7157-5p
;
hsa-mir-4310
;
hsa-mir-103a-3p
;
hsa-mir-107
;
hsa-mir-1299
;
hsa-mir-202-5p
;
hsa-mir-5687
;
hsa-mir-337-3p
;
hsa-mir-145-3p
;
hsa-mir-6128
;
hsa-mir-875-3p
;
hsa-mir-1298-3p
;
hsa-mir-3126-3p
;
hsa-mir-191-5p
;
hsa-mir-651-5p
;
hsa-mir-6876-5p
;
hsa-mir-4476
;
hsa-mir-5684
;
hsa-mir-618
;
hsa-mir-548as-3p
;
hsa-mir-548t-3p
;
hsa-mir-548ap-3p
;
hsa-mir-548aa
;
hsa-mir-7-5p
;
hsa-mir-582-5p
;
hsa-mir-144-3p
;
hsa-mir-101-3p
;
hsa-mir-3912-5p
;
hsa-mir-197-3p
;
hsa-mir-411-5p
;
hsa-mir-6755-3p
;
hsa-mir-198
;
hsa-mir-6832-5p
;
hsa-mir-193b-5p
;
hsa-mir-4716-5p
;
hsa-mir-4673
;
hsa-mir-4645-5p
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-483-5p
;
hsa-mir-4279
;
hsa-mir-6783-3p
;
hsa-mir-1343-3p
;
hsa-mir-1206
;
hsa-mir-23b-5p
;
hsa-mir-23a-5p
;
hsa-mir-6778-3p
;
hsa-mir-1976
;
hsa-mir-3653-5p
;
hsa-mir-6742-3p
;
hsa-mir-6852-5p
;
hsa-mir-939-3p
;
hsa-mir-6814-5p
;
hsa-mir-5697
;
hsa-mir-562
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-2053
;
hsa-mir-5047
;
hsa-mir-1301-3p
;
hsa-mir-8068
;
hsa-mir-4778-3p
;
hsa-mir-4307
;
hsa-mir-6859-5p
;
hsa-mir-3916
;
hsa-mir-3125
;
hsa-mir-4796-3p
;
hsa-mir-519d-3p
;
hsa-mir-93-5p
;
hsa-mir-526b-3p
;
hsa-mir-20b-5p
;
hsa-mir-106a-5p
;
hsa-mir-17-5p
;
hsa-mir-548s
;
hsa-mir-3926
;
hsa-mir-4786-5p
;
hsa-mir-3190-5p
;
hsa-mir-6827-3p
;
hsa-mir-340-3p
;
hsa-mir-6771-3p
;
hsa-mir-665
;
hsa-mir-887-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-4722-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-181d-5p
;
hsa-mir-181c-5p
;
hsa-mir-181a-5p
;
hsa-mir-181b-5p
Nearest miRNA
hsa-mir-1183/Upstream/765835; hsa-mir-10399/Downstream/5001;
Nearest TSS
ENST00000635602/Upstream/27688;
ENST00000608450/Downstream/8206;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/28276
,
chr7-CpG: 124/Downstream/7697
Upstream sequence
TGGGTACTGCACTTCACAGATTTGTTTGAATTGCCCATGCAGCTCTATGTTTGTTAAAGTGCATTCTTCTTTAAAAAATAAGAGGAATAATCTTTACTCT
Downstream sequence
TTAACCAAGGTACTTAAAAAAATGAACTTTTTGGTCTCTCAGCAGATATTCCCAAATTGATCCTATCACTACAAATTTTAGTGTTTTATTTACAGACATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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