VISDB Viral Integration Site DataBase

VIS ID

TVIS30009309

Fusion event

HIV-PURB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p13

Reference genome

Start

End

44921829/44882230 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-320b ; hsa-mir-935 ; hsa-mir-92a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3611 ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-5692a ; hsa-mir-6788-5p ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-150-5p ; hsa-mir-532-3p ; hsa-mir-1303 ; hsa-mir-2116-3p ; hsa-mir-3607-3p ; hsa-mir-6807-5p ; hsa-mir-545-5p ; hsa-mir-151a-3p ; hsa-mir-567 ; hsa-mir-548c-3p ; hsa-mir-450b-5p ; hsa-mir-1827 ; hsa-mir-5096 ; hsa-mir-4722-3p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-944 ; hsa-mir-4699-3p ; hsa-mir-520f-5p ; hsa-mir-136-5p ; hsa-mir-218-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-1247-3p ; hsa-mir-3940-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-3978 ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-4501 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-4463 ; hsa-mir-4499 ; hsa-mir-5582-3p ; hsa-mir-4713-5p ; hsa-mir-4477a ; hsa-mir-1257 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1299 ; hsa-mir-202-5p ; hsa-mir-5687 ; hsa-mir-337-3p ; hsa-mir-145-3p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-1298-3p ; hsa-mir-3126-3p ; hsa-mir-191-5p ; hsa-mir-651-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-5684 ; hsa-mir-618 ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-7-5p ; hsa-mir-582-5p ; hsa-mir-144-3p ; hsa-mir-101-3p ; hsa-mir-3912-5p ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6755-3p ; hsa-mir-198 ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-4716-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-483-5p ; hsa-mir-4279 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-1206 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-562 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-2053 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-8068 ; hsa-mir-4778-3p ; hsa-mir-4307 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-4796-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6771-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p

Nearest miRNA

hsa-mir-1183/Upstream/430; hsa-mir-10399/Downstream/12073555;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/33759, chr7-CpG: 124/Downstream/2214

Upstream sequence

TAGTTTCTGCAAACCTAATGCTAGCTTCTCAGCTCCTTTACTAAAACTATTTAGGAATTTGTTCTCCGCAGCAAAGAAATAGACACTCAAAACACGTAGG

Downstream sequence

TAAATACAGCAGGACATTATTGAAAAACAGCTGCCTTGTAGTACAAAATACAGTACAAGTATACGGATGTCATTAAAACATCAAAAATACTATTGCTCCC