Basic Information
VIS ID
TVIS30009314
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
45249568/45209969 (Hg38)
End
45249568/45209969 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7D
Nearest miRNA
hsa-mir-1183/Upstream/328169; hsa-mir-10399/Downstream/11745816;
Nearest TSS
ENST00000635602/Upstream/52140; ENST00000443714/Downstream/250743;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/51761, chr7-CpG: 137/Downstream/363818
Nearby gene
RAMP3(No orient, 25718)
Upstream sequence
caggcatagtagctcatgcctgtaatcccagcactctgggagacagagacaggaggattgcttaaactcaggagtttgagaccagcctgggcaatgtagg
Downstream sequence
gagaccacaactctacaaaaaaaatttagctgggcatggtggtacatgcctgtagtcccagctactcaggaggctgaggtgggaggatggcttgagcctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate