Basic Information
VIS ID
TVIS30009315
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
45462450/45422851 (Hg38)
End
45462450/45422851 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/541051; hsa-mir-10399/Downstream/11532934;
Nearest TSS
ENST00000635602/Upstream/265022; ENST00000443714/Downstream/37861;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/264643, chr7-CpG: 137/Downstream/150936
Nearby gene
ADCY1(No orient, 151289)
Upstream sequence
agctgtaaactttttagattctctctcaagttgagaggttttccctcaatgcctgtttttctgagaattttttaaaaaatcatgaataggtattgaattt
Downstream sequence
tttcaatttttttcaacattcattcataaatgtattccttttgttaaatatttattaagcccaaaacattaaaatattagtgaaaatgtatttcttcctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate