Basic Information
VIS ID
TVIS30009317
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
47734906/47695308 (Hg38)
End
47734906/47695308 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/2813508; hsa-mir-10399/Downstream/9260477;
Nearest TSS
ENST00000635602/Upstream/40064; ENST00000412730/Downstream/66168;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/113179, chr7-CpG: 59/Downstream/283910
Nearby gene
C7orf65(No orient, 33660)
Upstream sequence
gcctgggcgacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaagaaTGATGTCAATGTTCAACATAATGGGTTTTCTCAGTTTGATTATTAA
Downstream sequence
CTTCTAGCTTTTACCCATGCATTTTTACAAAGTTGCAATTTTCACATAACATGAGAAGGACCAATAAATCTTGGCCATCCTGCCTTTTCTCCAGAGCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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