Basic Information
VIS ID
TVIS30009320
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.2
Reference genome
End
50284892/50245296 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/5363496; hsa-mir-10399/Downstream/6710489;
Nearby gene
IKZF1(No orient, 58787)
Nearest cancer related gene
IKZF1(TSG, No orient, 58787)
Upstream sequence
gcacaagaaaatatacagttgaataccacaatgaaatttatgcaagaagaatggatcagtaaaatgtggtgggtatttgcaatggagcattacttaacag
Downstream sequence
ttagaagaaacagattagatgtacataggcagacacagagaaatctttaaaaatagcacttactacgaaaaagtaataaagaaaatgagattataacatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate