Basic Information
VIS ID
TVIS30009322
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
50317497/50277901 (Hg38)
End
50317497/50277901 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/5396101; hsa-mir-10399/Downstream/6677884;
Nearest TSS
ENST00000635602/Upstream/2279; ENST00000484847/Downstream/26167;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/118511, chr7-CpG: 212/Downstream/25398
Nearby gene
IKZF1(No orient, 26182)
Nearest cancer related gene
IKZF1(TSG, No orient, 26182)
Upstream sequence
TTTGGAACCAACCTGTATTCCAGAAGAAGAATCAGCCTCACAGAATGAATACTCACCCCTCTCCCATCTCACCCTCTGCCGTCTGATTCCCAACCTTTCC
Downstream sequence
TTTTCTCTTGCACATTAGTTTAGCTGTCTCCTTTCTGGGCTAATCTTTGACCACACCAATGTCCTTGGCATCAAATCTTCACATGGGTTTCTTGTTTTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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