Basic Information
VIS ID
TVIS30009324
Fusion event
HIV-VOPP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
55547578/55479885 (Hg38)
End
55547578/55479885 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7A
Target gene
VOPP1
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-320b ; hsa-mir-877-3p ; hsa-mir-324-3p ; hsa-mir-320a ; hsa-mir-15b-5p ; hsa-mir-431-5p ; hsa-mir-5581-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-1343-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-374b-3p ; hsa-mir-424-5p ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-4690-3p ; hsa-mir-497-5p ; hsa-mir-503-5p ; hsa-mir-5685 ; hsa-mir-646 ; hsa-mir-6783-3p ; hsa-mir-6838-5p ; hsa-mir-938
Nearest miRNA
hsa-mir-1183/Upstream/10598085; hsa-mir-10399/Downstream/1475900;
Nearest TSS
ENST00000635602/Upstream/51829; ENST00000454777/Downstream/36192;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/30329, chr7-CpG: 144/Downstream/91699
Upstream sequence
CATGGAGCACACAGTGGAAGGCTTGAGCCTGGAACCCAGGAAtttacatgaggtctttattacattaataaaaggccttacatggctagttttgagagag
Downstream sequence
ttttgataaggaatatatatcaaattgtgctgacagcctcttcagcacctactgagacaatcattgctttctgATATAACTTACAATGTTAATTGCGTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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