Basic Information
VIS ID
TVIS30009329
Fusion event
HIV-CCT6P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
65225665/65760678 (Hg38)
End
65225665/65760678 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7J
Target gene
CCT6P1
miRNAs that regulate target gene
hsa-mir-21-5p
Nearest miRNA
hsa-mir-1183/Upstream/1081502; hsa-mir-10399/Downstream/1353644;
Nearest TSS
ENST00000635602/Upstream/297607; ENST00000434382/Downstream/112589;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/9170, chr7-CpG: 36/Downstream/3705
Upstream sequence
ATCTTCCAAAAGATTCAGCTGATCAAAACTTTTTGATAATGTAGGCTTTATTCATAATACGGATTTTGGATAAACGGGTTTGATCAGTTTTCTTCCTGAC
Downstream sequence
TATAAAACATCCAAACGTATTTGGTTTCTCTGGGAGGCCTGAATAGCTGACGTTTCAGATGGCAAGAGAGAACCTGTAGCTTAATATTTGCAGTATTAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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