Basic Information
VIS ID
TVIS30009330
Fusion event
HIV-GS1-124K5.11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
66000348/66535361 (Hg38)
End
66000348/66535361 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7J
Target gene
GS1-124K5.11
Nearest miRNA
hsa-mir-1183/Upstream/1856185; hsa-mir-10399/Downstream/578961;
Nearest TSS
ENST00000635602/Upstream/41575; ENST00000449064/Downstream/93406;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/28927, chr7-CpG: 102/Downstream/20821
Upstream sequence
tggcttgtgcctgtagtctcagctactcgaggggctaaggcaagagaattgctggaacctgggaggtggagattgcagtgagcccagatcatgccgctgc
Downstream sequence
actccaccctaagcgacagagcgagactccatctcaagaaaaaaaaGACAGTTCCCTTTGTAAAATGGGTCAAGGCTTAAGGGCCCCTCCTGCACGCAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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