Basic Information
VIS ID
TVIS30009331
Fusion event
HIV-PMS2P4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
66762159/67297172 (Hg38)
End
66762159/67297172 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7J
Target gene
PMS2P4
Nearest miRNA
hsa-mir-1183/Upstream/182775; hsa-mir-10399/Downstream/4010500;
Nearest TSS
ENST00000635602/Upstream/230034; ENST00000609770/Downstream/35875;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/10826, chr7-CpG: 84/Downstream/4986
Upstream sequence
CTCAAGTGCTAAAACAACGGATATACATGATATCTAGTAACTGGCTTAAAAAACTGTTTTTGCGTTTCCCAAGACAGTGTTACTCAAAATTCTGAGACAT
Downstream sequence
GTGGCCCAATTATTTTATAATAGGATTAGAAAAAGTCAACTTACTTAAGCCTTCAAAGTTTTCTTCTTCTACCCCACATCCATTGTCTGAAACTTCAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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