Basic Information
VIS ID
TVIS30009340
Fusion event
HIV-LOC101926943 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
74132294/74717975 (Hg38)
End
74132294/74717975 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7J
Target gene
LOC101926943
Nearest miRNA
hsa-mir-10525/Upstream/121949; hsa-mir-10399/Downstream/1197222;
Nearest TSS
ENST00000635602/Upstream/1363; ENST00000491325/Downstream/10028;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/59223, chr7-CpG: 124/Downstream/70014
Upstream sequence
CTGATATGCTCATTGTAAACCGTTGGTTACATTTCCCTGTCAGCCCTTTTTATAGAAGATTGTGTGGGTGAATGTTGTATGCTTTACTGTGTGGAGGTGG
Downstream sequence
GTATCTTCTGTGTGACAGAGTTTTCAGCTTTGAATAGGCGGGATTTAGAACAACAAGACCTAGGTAATAGATCATGTGCAGTACGAGGGCTCATTGGGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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