VISDB Viral Integration Site DataBase

VIS ID

TVIS30009344

Fusion event

HIV-RSBN1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q11.23

Reference genome

Start

End

77363686/77734369 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-4772-3p ; hsa-mir-6083 ; hsa-mir-2053 ; hsa-mir-190a-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-569 ; hsa-mir-5011-5p ; hsa-mir-513b-3p ; hsa-mir-1277-5p ; hsa-mir-6736-3p ; hsa-mir-6504-3p ; hsa-mir-4279 ; hsa-mir-6749-3p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-1303 ; hsa-mir-6848-3p ; hsa-mir-5096 ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-4256 ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4716-5p ; hsa-mir-4494 ; hsa-mir-4781-3p ; hsa-mir-4463 ; hsa-mir-483-5p ; hsa-mir-377-3p ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-5580-3p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-181a-2-3p ; hsa-mir-4537 ; hsa-mir-4539 ; hsa-mir-4680-5p ; hsa-mir-4724-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-455-3p ; hsa-mir-4740-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6511a-5p ; hsa-mir-6516-5p

Nearest miRNA

hsa-mir-10525/Upstream/1819100; hsa-mir-10399/Downstream/14469646;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/37185, chr7-CpG: 139/Downstream/63645

Upstream sequence

tacattaatattatactttaataaaatttaatagttactaaaataataCGTTTAAGTTGATAAGATTAAATTGAATTATTGGAAAAAGAAATGTGGAGAC

Downstream sequence

GTTTTAGGTGACTTTTTTTCAGTTGTAATTTTAAGTGATATATAAATAGTTCATTTTGTTAGAAGTTTAGTTACTTAGGAAATATTATATAATGTGTCTA