Basic Information
VIS ID
TVIS30009345
Fusion event
HIV-PHTF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
77539276/77909959 (Hg38)
End
77539276/77909959 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHTF2
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-let-7a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-590-3p ; hsa-mir-548t-5p ; hsa-mir-5589-3p ; hsa-mir-548az-5p ; hsa-mir-8055 ; hsa-mir-30a-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-186-5p ; hsa-mir-30e-5p ; hsa-mir-92b-3p ; hsa-mir-4329 ; hsa-mir-3653-5p ; hsa-mir-3672 ; hsa-mir-676-5p ; hsa-mir-4495 ; hsa-mir-6864-3p ; hsa-mir-802 ; hsa-mir-5096 ; hsa-mir-513b-5p ; hsa-mir-27b-5p ; hsa-mir-627-3p ; hsa-mir-556-5p ; hsa-mir-873-3p ; hsa-mir-3140-5p
Nearest miRNA
hsa-mir-10525/Upstream/1994690; hsa-mir-10399/Downstream/14294056;
Nearest TSS
ENST00000635602/Upstream/1024; ENST00000468351/Downstream/10466;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/110426, chr7-CpG: 140/Downstream/109175
Upstream sequence
AGATAATACATTAGATAAATAGCAATGTCCATAAATTAGATTATAATTCTCTCCAATCTAAATTTTCTTCTttcttcatctgcagataagtggcattcaa
Downstream sequence
atagggaagaaatgctttTGTAAATATCCATCCAATGCAATCCTTTCAATCTTCTGTCCACTGACCTGCCACTATAAGCAAGGACCAATACCTTAACATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate