Basic Information
VIS ID
TVIS30009350
Fusion event
HIV-DMTF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
86791845/87162529 (Hg38)
End
86791845/87162529 (Hg38)
Orient
-
Location type
Intronic
Target gene
DMTF1
miRNAs that regulate target gene
hsa-mir-15a-5p ; hsa-mir-103a-3p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-147a ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-644a ; hsa-mir-4474-3p ; hsa-mir-4524a-5p ; hsa-mir-4720-3p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-6867-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-3911 ; hsa-mir-103b ; hsa-mir-646 ; hsa-mir-503-5p
Nearest miRNA
hsa-mir-10525/Upstream/11247260; hsa-mir-10399/Downstream/5041486;
Nearest TSS
ENST00000635602/Upstream/8072; ENST00000583833/Downstream/269;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/9651, chr7-CpG: 114/Downstream/57066
Nearest cancer related gene
DMTF1(TSG, No orient, 0)
Upstream sequence
AGCAGATTCTAAAAAGCAGGATATAAAATTGCACAATACACTATAATCACAGACACACATACACCGGGAGATGAGATTAGAAGGAACTACAAAGAGTATG
Downstream sequence
AAAAATCGTTGGGAAGTTTATGGATGATTTTAACCTTCTTTTTTTTACTTTTTTACATTTCTTTCTCCCATCTTTTGTAGTAGGTATTACAAAAAAGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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