Basic Information
VIS ID
TVIS30009352
Fusion event
HIV-DBF4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
87512508/87883193 (Hg38)
End
87512508/87883193 (Hg38)
Orient
+
Location type
Intronic
Target gene
DBF4
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-8057 ; hsa-mir-4325 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4793-3p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p
Nearest miRNA
hsa-mir-10525/Upstream/11967924; hsa-mir-10399/Downstream/4320822;
Nearest TSS
ENST00000635602/Upstream/6593; ENST00000498726/Downstream/4775;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/6015, chr7-CpG: 113/Downstream/50834
Upstream sequence
gctttaaaaaggaatgaaattctaatacatgctacaacatgggtgaaccacaaaaaacgtgctaagtgaaggaagccagttacaaaagaacaaatgtagg
Downstream sequence
attccattatatgagttatctagaatagccaatttcagagatggaaagtagaataaaggttatgaggggctgggaaaaatgaggaatgaggagttactgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate