Basic Information
VIS ID
TVIS30009353
Fusion event
HIV-ADAM22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
87719312/88089997 (Hg38)
End
87719312/88089997 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADAM22
miRNAs that regulate target gene
hsa-mir-539-5p ; hsa-mir-451b ; hsa-mir-624-5p ; hsa-mir-5581-3p ; hsa-mir-5701 ; hsa-mir-4716-5p ; hsa-mir-6782-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-3148 ; hsa-mir-33b-3p ; hsa-mir-3692-5p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-4704-5p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-5580-5p ; hsa-mir-570-3p ; hsa-mir-6080 ; hsa-mir-6124
Nearest miRNA
hsa-mir-10525/Upstream/12174728; hsa-mir-10399/Downstream/4114018;
Nearest TSS
ENST00000635602/Upstream/78; ENST00000476330/Downstream/73034;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/154741, chr7-CpG: 59/Downstream/129691
Upstream sequence
GAGTGTCAACTGAGGGCCTTCAGTCATTGGAGGTCTCCTGCTGCCATGGTAATTGGAATTTCTTTTTTCTAaaaagaacagctatattgaggtatagttc
Downstream sequence
acatagcataaaCTGAGGTGAGTTTTGGTCTCCATTTTGTCTGCTAGGGAACATAGATTCTTTAACAGTGTGTGTGTAAATACAGTTGATTAAAATGATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate