Basic Information
VIS ID
TVIS30009354
Fusion event
HIV-ADAM22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
87795436/88166121 (Hg38)
End
87795436/88166121 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAM22
miRNAs that regulate target gene
hsa-mir-539-5p ; hsa-mir-451b ; hsa-mir-624-5p ; hsa-mir-5581-3p ; hsa-mir-5701 ; hsa-mir-4716-5p ; hsa-mir-6782-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-3148 ; hsa-mir-33b-3p ; hsa-mir-3692-5p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-4704-5p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-5580-5p ; hsa-mir-570-3p ; hsa-mir-6080 ; hsa-mir-6124
Nearest miRNA
hsa-mir-10525/Upstream/12250852; hsa-mir-10399/Downstream/4037894;
Nearest TSS
ENST00000635602/Upstream/263; ENST00000476330/Downstream/15884;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/230865, chr7-CpG: 59/Downstream/53567
Upstream sequence
AGTTATTTTTATGATAATCAGAAATACATTCTCATAATAATGAATTATACAACTGGGGTCCATTTTATGAAACTGATTATGTCCATTAAATTGTAATGAT
Downstream sequence
ATGTAATATTACGTATAACTTAGTCTATTTGATTTAGCCTTATCTTGTCCTACTTCATTCTGAGATTTTTCTGAGGCTGTCAATTAACCCTAACATTTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate