Basic Information
VIS ID
TVIS30009357
Fusion event
HIV-CDK14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
90231102/90601788 (Hg38)
End
90231102/90601788 (Hg38)
Orient
+
Location type
Intronic
Target gene
CDK14
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-376c-3p ; hsa-mir-493-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4533 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-6783-5p ; hsa-mir-4419a ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-4428
Nearest miRNA
hsa-mir-10525/Upstream/14686519; hsa-mir-10399/Downstream/1602227;
Nearest TSS
ENST00000635602/Upstream/4435; ENST00000496279/Downstream/107463;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4738, chr7-CpG: 255/Downstream/662490
Nearest cancer related gene
CDK14(OG, No orient, 0)
Upstream sequence
GCTGTCTTCATTTCTCAACTTGAGGGTCTTCATTCCATATTTGCAGTTCCCTAAGGGATAGTATCTTTTTTTTTGGCGGCAGAGGAacagggtctcactc
Downstream sequence
tgtcgcccaggctggagtgcagtggcgcaatcttgctcactgcaacctctgcctcccaggctcaagtgatcctcccacctcagcctcccgaatagctgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate