Basic Information
VIS ID
TVIS30009367
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
97351759/97722447 (Hg38)
End
97351759/97722447 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/1502691; hsa-mir-10399/Downstream/241211;
Nearest TSS
ENST00000635602/Upstream/579766; ENST00000495916/Downstream/9461;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/604569, chr7-CpG: 137/Downstream/9373
Nearby gene
TAC1(No orient, 9512)
Nearest cancer related gene
TAC1(OG, No orient, 9512)
Upstream sequence
aaaaatagaattagcatatgatccagcaattccactttttaatataaaatcaaaagaattgaaagcaaggtctcaaaaagatacttgtacacccatgttc
Downstream sequence
atagcagcattattcacaactgctaaaacatgtaagcaatccaagtgtccactgacaaatgaatggataagcaaaatgtcgtacatacatacaatgcatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate